3D structure

PDB id
6LQV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
GCCAGCGAGUCUAGUGAAAC
Length
20 nucleotides
Bulged bases
6LQV|1|SA|G|1488, 6LQV|1|SA|U|1489, 6LQV|1|SA|C|1490, 6LQV|1|SA|U|1522, 6LQV|1|SA|G|1523
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6LQV|1|SA|G|1480
6LQV|1|SA|C|1481
6LQV|1|SA|C|1482
6LQV|1|SA|A|1483
6LQV|1|SA|G|1484
6LQV|1|SA|C|1485
6LQV|1|SA|G|1486
6LQV|1|SA|A|1487
6LQV|1|SA|G|1488
6LQV|1|SA|U|1489
6LQV|1|SA|C|1490
6LQV|1|SA|U|1491
6LQV|1|SA|A|1492
6LQV|1|SA|G|1521
6LQV|1|SA|U|1522
6LQV|1|SA|G|1523
6LQV|1|SA|A|1524
6LQV|1|SA|A|1525
6LQV|1|SA|A|1526
6LQV|1|SA|C|1527

Current chains

Chain SA
18S pre-rRNA

Nearby chains

Chain 5D
U3 small nucleolar RNA-associated protein 11
Chain 5G
U3 small nucleolar ribonucleoprotein protein IMP4
Chain 5J
rRNA-processing protein FCF2
Chain RJ
Ribosome biogenesis protein BMS1
Chain SG
40S ribosomal protein S5
Chain SR
40S ribosomal protein S16-A

Coloring options:

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