HL_6LSR_010
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CCGUAA(OMG)G
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LSR_010 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.3534
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
6LSR|1|2|C|367
6LSR|1|2|C|368
6LSR|1|2|G|369
6LSR|1|2|U|370
6LSR|1|2|A|371
6LSR|1|2|A|372
6LSR|1|2|OMG|373
6LSR|1|2|G|374
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 0
- Zinc finger protein 622
- Chain D
- 60S ribosomal protein L4
- Chain M
- 60S ribosomal protein L37
- Chain P
- 60S ribosomal protein L39
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