RNA 3D Hub //

6LSR Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6LSR_0011/2/37:44No text annotation
geometric
HL_5TBW_001
NA
HL_6LSR_0021/2/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_6LSR_0031/2/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_6LSR_0051/2/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_6LSR_0061/2/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_6LSR_0071/2/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_6LSR_0081/2/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_6LSR_0091/2/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_6LSR_0811/2/368:373GNRA
homologous
HL_8C3A_010
NA
HL_6LSR_0821/2/393:398GNRA
homologous
HL_8C3A_011
NA
HL_6LSR_0831/2/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_6LSR_0181/2/1364:1373No text annotation
HL_6LSR_0191/2/1389:1394GNRA
homologous
HL_5TBW_016
NA
HL_6LSR_0211/2/1436:1448No text annotation
HL_6LSR_0221/2/1480:1484No text annotation
HL_6LSR_0241/2/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_6LSR_0251/2/1627:1635No text annotation
homologous
HL_5TBW_021
NA
HL_6LSR_0261/2/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_6LSR_0841/2/1761:1771No text annotation
HL_6LSR_0271/2/1763:1769UNCG
geometric
HL_6DLR_002
HL_61337.2
HL_6LSR_0281/2/1816:1823T-loop related
geometric
HL_3R4F_001
HL_63894.2
HL_6LSR_0291/2/1864:1870GNRA related
geometric
HL_5J7L_179
NA
HL_6LSR_0301/2/1886:1893No text annotation
homologous
HL_8C3A_026
NA
HL_6LSR_0331/2/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_6LSR_0341/2/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_6LSR_0351/2/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_6LSR_0361/2/2458:2463GNRA variation
homologous
HL_5TBW_033
NA
HL_6LSR_0381/2/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_6LSR_0401/2/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_6LSR_0411/2/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_6LSR_0421/2/2664:2670UNCG variation
geometric
HL_2CZJ_007
NA
HL_6LSR_0441/2/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_6LSR_0451/2/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_6LSR_0461/2/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_6LSR_0471/2/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_6LSR_0491/2/3614:3618No text annotation
homologous
HL_5TBW_045
NA
HL_6LSR_0501/2/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_6LSR_0511/2/3668:3674No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_6LSR_0861/2/3724:3729GNRA
homologous
HL_8P9A_159
HL_34789.2
HL_6LSR_0531/2/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_6LSR_0541/2/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_6LSR_0571/2/4193:4201No text annotation
homologous
HL_8P9A_165
HL_11974.2
HL_6LSR_0581/2/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_6LSR_0591/2/4250:4258No text annotation
homologous
HL_5TBW_056
NA
HL_6LSR_0601/2/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_6LSR_0611/2/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_6LSR_0621/2/4321:4326GNRA
homologous
HL_8C3A_060
NA
HL_6LSR_0631/2/4352:4362tRNA anticodon loop
geometric
HL_8H1B_001
HL_86621.1
HL_6LSR_0651/2/4474:4481No text annotation
homologous
HL_5TBW_062
NA
HL_6LSR_0661/2/4497:4503No text annotation
homologous
HL_5TBW_063
NA
HL_6LSR_0671/2/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_6LSR_0681/2/4603:4608GNRA
homologous
HL_5TBW_065
NA
HL_6LSR_0691/2/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_6LSR_0701/2/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_6LSR_0721/2/4907:4914No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_6LSR_0731/2/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_6LSR_0741/2/5021:5028No text annotation
HL_6LSR_0751/5/36:41No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6LSR_0761/5/86:91GNRA
homologous
HL_5TBW_186
NA
HL_6LSR_0771/8/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.1
HL_6LSR_0781/8/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_6LSR_0791/8/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_6LSR_0801/8/121:129No text annotation
geometric
HL_5ID6_001
HL_69752.4

Problematic loops

#loop idProblemSequence
HL_6LSR_004No text annotation
HL_6LSR_010GNRA with extra cWW
HL_6LSR_011No text annotation
HL_6LSR_012No text annotation
HL_6LSR_013No text annotation
HL_6LSR_014No text annotation
HL_6LSR_015No text annotation
HL_6LSR_016Externally structured
HL_6LSR_017No text annotation
HL_6LSR_020No text annotation
HL_6LSR_023GNRA
HL_6LSR_031No text annotation
HL_6LSR_032No text annotation
HL_6LSR_037No text annotation
HL_6LSR_039Mini UNCG
HL_6LSR_085No text annotation
HL_6LSR_043No text annotation
HL_6LSR_048No text annotation
HL_6LSR_052No text annotation
HL_6LSR_055No text annotation
HL_6LSR_056No text annotation
HL_6LSR_064No text annotation
HL_6LSR_087No text annotation
HL_6LSR_071No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6LSR_0011/2/6:7,
1/8/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_6LSR_0021/2/12:14,
1/8/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_6LSR_0031/2/16:18,
1/8/139:141		No text annotation
geometric
IL_3ICQ_003
NA
IL_6LSR_0041/2/26:27,
1/2/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_6LSR_0051/2/30:37,
1/2/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_6LSR_0061/2/81:88,
1/2/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_6LSR_0071/2/118:122,
1/2/147:153		No text annotation
IL_6LSR_0081/2/125:126,
1/2/142:144		Single bulged C
geometric
IL_1DQF_001
NA
IL_6LSR_1841/2/169:173,
1/2/263:266		No text annotation
IL_6LSR_0111/2/195:196,
1/2/244:246		Single bulged C
geometric
IL_1DQF_001
NA
IL_6LSR_0121/2/199:201,
1/2/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_6LSR_0131/2/339:342,
1/8/32:33		Minor groove platform
geometric
IL_7RQB_073
NA
IL_6LSR_0141/2/348:350,
1/8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_6LSR_0151/2/387:390,
1/2/401:414		No text annotation
geometric
IL_5TBW_014
NA
IL_6LSR_0171/2/443:446,
1/2/1300:1304		No text annotation
geometric
IL_7MLW_007
IL_49140.1
IL_6LSR_1651/2/448:450,
1/2/1297:1298		No text annotation
IL_6LSR_0191/2/459:460,
1/2/695:697		Single bulged C
geometric
IL_3W3S_001
IL_05642.2
IL_6LSR_0201/2/462:464,
1/2/691:693		Isolated non-canonical cWW contact
geometric
IL_1SI3_001
IL_87720.1
IL_6LSR_0211/2/466:472,
1/2/682:689		No text annotation
IL_6LSR_0221/2/482:485,
1/2/671:672		Major groove intercalation
geometric
IL_1U9S_003
IL_71421.2
IL_6LSR_0231/2/487:488,
1/2/665:669		No text annotation
IL_6LSR_1661/2/491:505,
1/2/653:662		No text annotation
IL_6LSR_0251/2/499:506,
1/2/652:655		Tandem non-canonical cWW pairs
geometric
IL_6JDV_002
IL_15225.2
IL_6LSR_0261/2/508:510,
1/2/649:650		Single bulged A
geometric
IL_6WPI_001
IL_14190.2
IL_6LSR_0281/2/709:710,
1/2/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_6LSR_0291/2/723:724,
1/2/942:945		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_6LSR_0301/2/727:731,
1/2/938:939		No text annotation
IL_6LSR_0311/2/732:735,
1/2/928:937		No text annotation
IL_6LSR_0321/2/737:740,
1/2/925:926		No text annotation
IL_6LSR_0331/2/740:742,
1/2/922:925		No text annotation
IL_6LSR_0341/2/745:754,
1/2/909:919		No text annotation
IL_6LSR_0361/2/1073:1074,
1/2/1237:1239		Single bulged A
geometric
IL_4R4V_003
IL_14190.2
IL_6LSR_0381/2/1082:1084,
1/2/1213:1217		Isolated cWH basepair
geometric
IL_6F4H_001
NA
IL_6LSR_0391/2/1086:1087,
1/2/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_05642.2
IL_6LSR_0431/2/1244:1245,
1/2/1265:1267		Single bulged G
geometric
IL_4V88_442
NA
IL_6LSR_0451/2/1357:1360,
1/2/1379:1382		No text annotation
IL_6LSR_1681/2/1357:1361,
1/2/1376:1382		No text annotation
IL_6LSR_0461/2/1360:1361,
1/2/1376:1379		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_6LSR_0471/2/1425:1429,
1/2/1455:1460		No text annotation
geometric
IL_3BBM_001
IL_47352.2
IL_6LSR_0481/2/1431:1434,
1/2/1450:1453		Double sheared
geometric
IL_4WF9_087
IL_58355.2
IL_6LSR_0491/2/1467:1468,
1/2/1496:1498		Single bulged A
homologous
IL_8C3A_026
NA
IL_6LSR_0501/2/1474:1476,
1/2/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_15011.2
IL_6LSR_0511/2/1479:1480,
1/2/1484:1486		No text annotation
IL_6LSR_1691/2/1520:1522,
1/2/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_6LSR_1701/2/1522:1526,
1/2/1648:1655		No text annotation
homologous
IL_8P9A_256
IL_73855.1
IL_6LSR_0531/2/1545:1546,
1/2/1612:1614		Single bulged A
homologous
IL_8C3A_031
NA
IL_6LSR_0541/2/1550:1551,
1/2/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_6LSR_0551/2/1551:1555,
1/2/1572:1576		Triple sheared
homologous
IL_8C3A_033
NA
IL_6LSR_1711/2/1586:1589,
1/2/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_6LSR_0571/2/1590:1592,
1/2/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_6LSR_0581/2/1624:1626,
1/2/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_6LSR_0591/2/1671:1673,
1/2/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_6LSR_0601/2/1686:1688,
1/2/1848:1851		No text annotation
IL_6LSR_0621/2/1723:1725,
1/2/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_6LSR_1721/2/1732:1737,
1/2/1792:1797		No text annotation
IL_6LSR_0641/2/1761:1763,
1/2/1769:1771		Isolated cWH basepair
geometric
IL_4V88_453
NA
IL_6LSR_0651/2/1814:1816,
1/2/1823:1824		Single bulged G
homologous
IL_8C3A_048
NA
IL_6LSR_1731/2/1858:1860,
1/2/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_6LSR_1741/2/1905:1909,
1/2/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_6LSR_0691/2/1911:1918,
1/2/2064:2065		SSU/LSU pseudoknot
geometric
IL_5TBW_049
NA
IL_6LSR_0701/2/1918:1920,
1/2/2063:2064		No text annotation
IL_6LSR_0711/2/1920:1922,
1/2/2062:2063		No text annotation
IL_6LSR_0721/2/1926:1933,
1/2/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_6LSR_0731/2/1933:1944,
1/2/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_6LSR_0741/2/1946:1948,
1/2/2035:2036		Single bulged U
homologous
IL_8C3A_056
NA
IL_6LSR_0751/2/2083:2085,
1/2/2272:2273		No text annotation
IL_6LSR_0761/2/2290:2292,
1/2/2342:2345		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_6LSR_0781/2/2299:2301,
1/2/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_6LSR_0791/2/2302:2309,
1/2/2329:2333		Kink-turn
homologous
IL_5TBW_059
NA
IL_6LSR_0801/2/2312:2314,
1/2/2325:2326		Single bulged A
geometric
IL_5WWT_001
IL_14190.2
IL_6LSR_1751/2/2358:2364,
1/2/3858:3863		No text annotation
homologous
IL_8C3A_065
NA
IL_6LSR_0811/2/2415:2419,
1/2/2427:2429		C-loop
geometric
IL_7A0S_047
IL_06671.1
IL_6LSR_0821/2/2446:2450,
1/2/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_6LSR_0861/2/2542:2547,
1/2/2772:2774		Isolated non-canonical cWW pair
geometric
IL_1U6B_001
IL_42997.5
IL_6LSR_0871/2/2549:2550,
1/2/2768:2770		Single bulged U
geometric
IL_2A64_002
IL_97561.2
IL_6LSR_0881/2/2589:2593,
1/2/2752:2756		Triple sheared
homologous
IL_8P9A_295
IL_15190.2
IL_6LSR_0891/2/2613:2614,
1/2/2724:2726		Single bulged A
geometric
IL_7A0S_064
IL_14190.2
IL_6LSR_0901/2/2614:2615,
1/2/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_6LSR_0911/2/2646:2648,
1/2/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_6LSR_0921/2/2651:2653,
1/2/2681:2682		Single bulged G
geometric
IL_3SUX_001
IL_28408.2
IL_6LSR_0931/2/2656:2662,
1/2/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_6LSR_0941/2/2832:2838,
1/2/3850:3853		No text annotation
homologous
IL_8C3A_080
NA
IL_6LSR_0951/2/2844:2846,
1/2/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_6LSR_0961/2/2847:2850,
1/2/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_6LSR_1761/2/2847:2855,
1/2/3837:3841		No text annotation
homologous
IL_8C3A_484
NA
IL_6LSR_0971/2/2850:2855,
1/2/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_6LSR_0981/2/2867:2872,
1/2/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_20700.1
IL_6LSR_0991/2/2889:2891,
1/2/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_6LSR_1001/2/2896:2897,
1/2/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_6LSR_1011/2/3632:3633,
1/2/3827:3829		Single bulged A
homologous
IL_5TBW_082
NA
IL_6LSR_1021/2/3660:3665,
1/2/3677:3684		Kink-turn related
homologous
IL_5TBW_083
NA
IL_6LSR_1031/2/3700:3703,
1/2/3749:3750		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_6LSR_1041/2/3704:3705,
1/2/3745:3748		Major groove intercalation
homologous
IL_5TBW_085
NA
IL_6LSR_1051/2/3708:3710,
1/2/3741:3742		Single stack bend
homologous
IL_8C3A_091
NA
IL_6LSR_1061/2/3710:3714,
1/2/3739:3741		Isolated non-canonical cWW with bulges
geometric
IL_5ML7_010
IL_68118.2
IL_6LSR_1771/2/3715:3721,
1/2/3732:3738		No text annotation
homologous
IL_8C3A_093
NA
IL_6LSR_1081/2/3780:3781,
1/2/3811:3814		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_6LSR_1781/2/3781:3792,
1/2/3808:3811		No text annotation
homologous
IL_8C3A_095
NA
IL_6LSR_1101/2/3895:3898,
1/2/4563:4565		No text annotation
homologous
IL_8P9A_319
IL_75527.2
IL_6LSR_1121/2/3900:3902,
1/2/4558:4561		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_6LSR_1131/2/3913:3915,
1/2/4388:4389		Single bulged U
homologous
IL_5TBW_093
NA
IL_6LSR_1141/2/3916:3917,
1/2/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_6LSR_1161/2/3927:3929,
1/2/4181:4184		Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_6LSR_1171/2/4082:4088,
1/2/4161:4164		No text annotation
homologous
IL_8C3A_106
NA
IL_6LSR_1791/2/4091:4129,
1/2/4155:4158		No text annotation
IL_6LSR_1191/2/4191:4192,
1/2/4202:4204		Single bulged A
homologous
IL_5TBW_098
NA
IL_6LSR_1201/2/4243:4245,
1/2/4263:4267		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_6LSR_1801/2/4291:4293,
1/2/4317:4318		No text annotation
IL_6LSR_1221/2/4295:4298,
1/2/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_8P9A_327
IL_15225.2
IL_6LSR_1231/2/4347:4350,
1/2/4364:4365		Single stack bend
geometric
IL_5J7L_032
NA
IL_6LSR_1241/2/4453:4454,
1/2/4526:4528		Major groove platform
homologous
IL_5TBW_107
NA
IL_6LSR_1251/2/4456:4458,
1/2/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_6LSR_1261/2/4458:4459,
1/2/4517:4520		No text annotation
homologous
IL_8C3A_117
NA
IL_6LSR_1271/2/4466:4468,
1/2/4489:4491		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_6LSR_1811/2/4466:4470,
1/2/4485:4491		No text annotation
IL_6LSR_1281/2/4468:4470,
1/2/4485:4489		No text annotation
geometric
IL_3DD2_004
IL_09353.1
IL_6LSR_1301/2/4495:4497,
1/2/4503:4505		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_6LSR_1311/2/4537:4538,
1/2/4547:4549		Single bulged A
geometric
IL_7JJU_004
IL_14190.2
IL_6LSR_1321/2/4580:4582,
1/2/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_6LSR_1331/2/4582:4585,
1/2/4717:4721		Double sheared
geometric
IL_5J7L_256
NA
IL_6LSR_1821/2/4590:4592,
1/2/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.2
IL_6LSR_1341/2/4596:4603,
1/2/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_6LSR_1361/2/4624:4629,
1/2/4669:4673		No text annotation
IL_6LSR_1831/2/4632:4637,
1/2/4662:4666		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_6LSR_1381/2/4638:4640,
1/2/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_6LSR_1391/2/4641:4642,
1/2/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_6LSR_1401/2/4680:4685,
1/2/4705:4710		UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_6LSR_1411/2/4740:4742,
1/2/4958:4959		No text annotation
IL_6LSR_1421/2/4743:4746,
1/2/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_6LSR_1431/2/4749:4751,
1/2/4948:4951		No text annotation
IL_6LSR_1441/2/4756:4765,
1/2/4869:4877		No text annotation
IL_6LSR_1451/2/4769:4771,
1/2/4863:4865		Isolated non-canonical cWW pair
geometric
IL_1YZ9_001
NA
IL_6LSR_1461/2/4885:4889,
1/2/4930:4934		Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_71154.2
IL_6LSR_1471/2/4890:4896,
1/2/4924:4929		No text annotation
IL_6LSR_1491/2/4972:4975,
1/2/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_6LSR_1501/2/4992:4994,
1/2/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_01003.2
IL_6LSR_1511/2/4996:4997,
1/2/5053:5055		No text annotation
IL_6LSR_1521/2/5000:5002,
1/2/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_6LSR_1531/2/5003:5009,
1/2/5039:5044		No text annotation
IL_6LSR_1541/2/5012:5014,
1/2/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_6LSR_1551/2/5014:5017,
1/2/5032:5035		Double sheared
geometric
IL_4V9F_100
IL_58355.2
IL_6LSR_1561/5/15:16,
1/5/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_6LSR_1571/5/21:27,
1/5/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_6LSR_1581/5/28:29,
1/5/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_73108.2
IL_6LSR_1591/5/32:36,
1/5/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_6LSR_1601/5/71:78,
1/5/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_009
IL_62167.2
IL_6LSR_1611/5/79:81,
1/5/95:97		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_6LSR_1621/5/82:85,
1/5/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6LSR_1631/8/64:66,
1/8/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_6LSR_164Isolated non-canonical cWW pair
IL_6LSR_009No text annotation
IL_6LSR_010No text annotation
IL_6LSR_016No text annotation
IL_6LSR_018Isolated non-canonical cWW pair
IL_6LSR_024No text annotation
IL_6LSR_027Multiple bulged bases
IL_6LSR_035Isolated non-canonical cWW pair
IL_6LSR_037No text annotation
IL_6LSR_040No text annotation
IL_6LSR_167Tandem non-canonical cWW pairs
IL_6LSR_041Isolated non-canonical cWW contact
IL_6LSR_042No text annotation
IL_6LSR_044Isolated non-canonical cWW pair
IL_6LSR_052No text annotation
IL_6LSR_056No text annotation
IL_6LSR_061No text annotation
IL_6LSR_0637x7 Sarcin-Ricin with intercalated A; G-bulge
IL_6LSR_066Tandem non-canonical cWW pairs
IL_6LSR_067Tandem non-canonical cWW pairs
IL_6LSR_068No text annotation
IL_6LSR_077Isolated non-canonical cWW pair
IL_6LSR_083Single stack bend
IL_6LSR_084No text annotation
IL_6LSR_085Stack and bulge
IL_6LSR_107No text annotation
IL_6LSR_109No text annotation
IL_6LSR_111Isolated non-canonical cWW pair
IL_6LSR_115Isolated non-canonical cWW pair
IL_6LSR_118No text annotation
IL_6LSR_121Decoding loop related
IL_6LSR_129Stack and bulge
IL_6LSR_135Isolated non-canonical cWW pair
IL_6LSR_137Triple sheared related
IL_6LSR_148Single bulged C

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6LSR_0011/2/112:116,
1/2/155:160,
1/2/275:278		No text annotation
J3_6LSR_0201/2/196:199,
1/2/215:228,
1/2/240:244		No text annotation
J3_6LSR_0211/2/351:367,
1/2/374:379,
1/8/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_6LSR_0021/2/380:387,
1/2/414:415,
1/8/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_6LSR_0221/2/380:390,
1/2/401:415,
1/8/19:20		No text annotation
homologous
J3_8P9A_047
J3_17917.1
J3_6LSR_0231/2/451:455,
1/2/701:705,
1/2/1292:1296		No text annotation
J3_6LSR_0031/2/712:713,
1/2/955:976,
1/2/1278:1284		No text annotation
J3_6LSR_0041/2/1531:1537,
1/2/1622:1624,
1/2/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_6LSR_0051/2/1546:1548,
1/2/1580:1584,
1/2/1609:1612		No text annotation
homologous
J3_8C3A_004
NA
J3_6LSR_0061/2/1726:1727,
1/2/1802:1806,
1/2/1832:1837		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_6LSR_0071/2/2393:2399,
1/2/2805:2807,
1/2/2819:2822		No text annotation
homologous
J3_8C3A_006
NA
J3_6LSR_0081/2/2402:2405,
1/2/2785:2791,
1/2/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_6LSR_0091/2/2440:2445,
1/2/2515:2519,
1/2/2536:2537		No text annotation
homologous
J3_5TBW_010
NA
J3_6LSR_0241/2/2451:2456,
1/2/2465:2476,
1/2/2501:2508		No text annotation
homologous
J3_8C3A_053
NA
J3_6LSR_0101/2/2551:2555,
1/2/2572:2575,
1/2/2757:2767		No text annotation
J3_6LSR_0111/2/2575:2576,
1/2/2585:2589,
1/2/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_6LSR_0251/2/2598:2602,
1/2/2737:2738,
1/2/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_6LSR_0131/2/3937:3939,
1/2/4074:4078,
1/2/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_6LSR_0261/2/4228:4230,
1/2/4331:4342,
1/2/4370:4375		No text annotation
homologous
J3_8P9A_061
J3_04772.1
J3_6LSR_0151/2/4241:4243,
1/2/4267:4269,
1/2/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_6LSR_0161/2/4463:4466,
1/2/4491:4493,
1/2/4507:4513		No text annotation
homologous
J3_5TBW_014
NA
J3_6LSR_0271/2/4751:4754,
1/2/4879:4883,
1/2/4936:4948		No text annotation
J3_6LSR_0171/2/4970:4972,
1/2/4986:4991,
1/2/5060:5063		No text annotation
J3_6LSR_0281/5/9:14,
1/5/65:66,
1/5/109:110		No text annotation
homologous
J3_8C3A_059
NA
J3_6LSR_0191/8/44:45,
1/8/58:64,
1/8/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_6LSR_0011/2/111:112,
1/2/278:283,
1/2/304:310,
1/2/327:330		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_6LSR_0021/2/196:199,
1/2/215:222,
1/2/226:228,
1/2/240:244		No text annotation
J4_6LSR_0031/2/981:983,
1/2/1070:1072,
1/2/1240:1243,
1/2/1268:1273		No text annotation
J4_6LSR_0041/2/2365:2371,
1/2/2389:2391,
1/2/2824:2829,
1/2/3856:3857		No text annotation
J4_6LSR_0051/2/2406:2410,
1/2/2434:2439,
1/2/2538:2539,
1/2/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_6LSR_0061/2/2618:2619,
1/2/2637:2642,
1/2/2692:2698,
1/2/2718:2719		No text annotation
J4_6LSR_0071/2/3634:3638,
1/2/3650:3654,
1/2/3690:3694,
1/2/3821:3826		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_6LSR_0081/2/4231:4235,
1/2/4289:4291,
1/2/4318:4319,
1/2/4328:4330		No text annotation
J4_6LSR_0091/2/4231:4235,
1/2/4289:4293,
1/2/4317:4319,
1/2/4328:4330		No text annotation
homologous
J4_8P9A_019
J4_59590.1
J4_6LSR_0101/2/4587:4590,
1/2/4620:4621,
1/2/4676:4678,
1/2/4712:4715		No text annotation
J5_6LSR_0011/2/19:21,
1/8/35:42,
1/8/101:106,
1/8/113:114,
1/8/136:138		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_6LSR_0021/2/1335:1340,
1/2/1516:1519,
1/2/1658:1661,
1/2/2288:2290,
1/2/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_6LSR_0031/2/2855:2863,
1/2/2887:2888,
1/2/3613:3614,
1/2/3618:3626,
1/2/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_6LSR_0061/2/3902:3910,
1/2/4392:4400,
1/2/4444:4452,
1/2/4529:4534,
1/2/4552:4558		No text annotation
J5_6LSR_0051/2/3920:3923,
1/2/4188:4191,
1/2/4204:4205,
1/2/4227:4228,
1/2/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_6LSR_0011/2/21:26,
1/2/57:67,
1/2/74:78,
1/2/105:109,
1/2/332:339,
1/8/33:35		No text annotation
J6_6LSR_0021/2/1352:1355,
1/2/1384:1388,
1/2/1395:1399,
1/2/1418:1421,
1/2/1464:1466,
1/2/1499:1504		No text annotation
J6_6LSR_0031/2/3920:3923,
1/2/4188:4191,
1/2/4204:4205,
1/2/4227:4230,
1/2/4331:4342,
1/2/4370:4381		No text annotation
J7_6LSR_0011/2/1666:1671,
1/2/1684:1685,
1/2/1852:1855,
1/2/1879:1884,
1/2/1895:1899,
1/2/2077:2078,
1/2/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_6LSR_012No text annotation
J3_6LSR_014No text annotation
J3_6LSR_018No text annotation
J5_6LSR_004No text annotation

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