HL_6LSR_015

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGCC

Length

21 nucleotides

Bulged bases

6LSR|1|2|G|1178, 6LSR|1|2|C|1180, 6LSR|1|2|C|1181, 6LSR|1|2|C|1182

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|G|1171
6LSR|1|2|C|1172
6LSR|1|2|G|1173
6LSR|1|2|G|1174
6LSR|1|2|A|1175
6LSR|1|2|C|1176
6LSR|1|2|U|1177
6LSR|1|2|G|1178
6LSR|1|2|U|1179
6LSR|1|2|C|1180
6LSR|1|2|C|1181
6LSR|1|2|C|1182
6LSR|1|2|C|1183
6LSR|1|2|A|1184
6LSR|1|2|G|1185
6LSR|1|2|U|1186
6LSR|1|2|G|1187
6LSR|1|2|C|1188
6LSR|1|2|G|1189
6LSR|1|2|C|1190
6LSR|1|2|C|1191

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain r

60S ribosomal protein L5