HL_6LSR_027

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6LSR|1|2|A|1765, 6LSR|1|2|C|1768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_027 not in the Motif Atlas

Geometric match to HL_6DLR_002

Geometric discrepancy: 0.2706

The information below is about HL_6DLR_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

6LSR|1|2|C|1763
6LSR|1|2|G|1764
6LSR|1|2|A|1765
6LSR|1|2|A|1766
6LSR|1|2|A|1767
6LSR|1|2|C|1768
6LSR|1|2|G|1769

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain A

60S ribosomal protein L10a

Chain W

60S ribosomal protein L36a