HL_6LSR_028

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

6LSR|1|2|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_028 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.3282

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

6LSR|1|2|C|1816
6LSR|1|2|U|1817
6LSR|1|2|G|1818
6LSR|1|2|G|1819
6LSR|1|2|C|1820
6LSR|1|2|G|1821
6LSR|1|2|U|1822
6LSR|1|2|G|1823

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain c

60S ribosomal protein L21

Chain r

60S ribosomal protein L5