HL_6LSR_032

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGCCCGGAGCCCCGCGGACGCUACG

Length

49 nucleotides

Bulged bases

6LSR|1|2|G|2096, 6LSR|1|2|U|2097, 6LSR|1|2|G|2254, 6LSR|1|2|C|2255, 6LSR|1|2|C|2258, 6LSR|1|2|G|2259, 6LSR|1|2|U|2267, 6LSR|1|2|C|2269

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|C|2087
6LSR|1|2|A|2088
6LSR|1|2|G|2089
6LSR|1|2|U|2090
6LSR|1|2|C|2091
6LSR|1|2|G|2092
6LSR|1|2|A|2093
6LSR|1|2|G|2094
6LSR|1|2|A|2095
6LSR|1|2|G|2096
6LSR|1|2|U|2097
6LSR|1|2|G|2098
6LSR|1|2|G|2099
6LSR|1|2|A|2100
6LSR|1|2|C|2101
6LSR|1|2|G|2102
6LSR|1|2|G|2103
6LSR|1|2|G|2104
6LSR|1|2|A|2105
6LSR|1|2|G|2106
6LSR|1|2|C|2107
6LSR|1|2|G|2108
6LSR|1|2|G|2109
6LSR|1|2|C|2110
6LSR|1|2|G|2111
6LSR|1|2|G|2112
6LSR|1|2|C|2113
6LSR|1|2|C|2249
6LSR|1|2|C|2250
6LSR|1|2|G|2251
6LSR|1|2|G|2252
6LSR|1|2|A|2253
6LSR|1|2|G|2254
6LSR|1|2|C|2255
6LSR|1|2|C|2256
6LSR|1|2|C|2257
6LSR|1|2|C|2258
6LSR|1|2|G|2259
6LSR|1|2|C|2260
6LSR|1|2|G|2261
6LSR|1|2|G|2262
6LSR|1|2|A|2263
6LSR|1|2|C|2264
6LSR|1|2|G|2265
6LSR|1|2|C|2266
6LSR|1|2|U|2267
6LSR|1|2|A|2268
6LSR|1|2|C|2269
6LSR|1|2|G|2270

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18

Chain l

60S ribosomal protein L28

Chain v

60S ribosomal protein L6

Chain w

60S ribosomal protein L7