HL_6LSR_035

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

6LSR|1|2|G|2421, 6LSR|1|2|A|2423, 6LSR|1|2|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_035 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1621

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6LSR|1|2|A|2420
6LSR|1|2|G|2421
6LSR|1|2|OMC|2422
6LSR|1|2|A|2423
6LSR|1|2|OMG|2424
6LSR|1|2|U|2425
6LSR|1|2|U|2426

Current chains

Chain 2

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L39

Chain Y

60S ribosomal protein L17

Chain a

60S ribosomal protein L19