HL_6LSR_038
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 6LSR|1|2|U|2530, 6LSR|1|2|C|2531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LSR_038 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.1019
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6LSR|1|2|G|2523
6LSR|1|2|U|2524
6LSR|1|2|U|2525
6LSR|1|2|C|2526
6LSR|1|2|A|2527
6LSR|1|2|G|2528
6LSR|1|2|A|2529
6LSR|1|2|U|2530
6LSR|1|2|C|2531
6LSR|1|2|C|2532
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L34
- Chain a
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L23a
- Chain z
- Proliferation-associated protein 2G4
Coloring options: