HL_6LSR_051

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6LSR|1|2|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_051 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1073

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6LSR|1|2|C|3668
6LSR|1|2|G|3669
6LSR|1|2|C|3670
6LSR|1|2|G|3671
6LSR|1|2|G|3672
6LSR|1|2|C|3673
6LSR|1|2|G|3674

Current chains

Chain 2

28S rRNA

Nearby chains

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8