HL_6LSR_054

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

6LSR|1|2|A|3876, 6LSR|1|2|A|3877, 6LSR|1|2|C|3878, 6LSR|1|2|G|3881

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_054 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0826

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6LSR|1|2|G|3873
6LSR|1|2|G|3874
6LSR|1|2|G|3875
6LSR|1|2|A|3876
6LSR|1|2|A|3877
6LSR|1|2|C|3878
6LSR|1|2|G|3879
6LSR|1|2|P7G|3880
6LSR|1|2|G|3881
6LSR|1|2|C|3882

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain t

60S ribosomal protein L32