HL_6LSR_057

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

C(I4U)G(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6LSR|1|2|G|4195

QA status

Modified nucleotides: I4U, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_057 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.3334

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6LSR|1|2|C|4193
6LSR|1|2|I4U|4194
6LSR|1|2|G|4195
6LSR|1|2|OMG|4196
6LSR|1|2|G|4197
6LSR|1|2|G|4198
6LSR|1|2|C|4199
6LSR|1|2|G|4200
6LSR|1|2|G|4201

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain C

60S ribosomal protein L29