HL_6LSR_060

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_060 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1146

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6LSR|1|2|C|4270
6LSR|1|2|A|4271
6LSR|1|2|G|4272
6LSR|1|2|A|4273
6LSR|1|2|A|4274
6LSR|1|2|G|4275
6LSR|1|2|G|4276
6LSR|1|2|G|4277

Current chains

Chain 2

28S rRNA

Nearby chains

Chain c

60S ribosomal protein L21