HL_6LSR_070

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CU(B8K)AACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6LSR|1|2|G|4694, 6LSR|1|2|C|4698

QA status

Modified nucleotides: B8K

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_070 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0806

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6LSR|1|2|C|4688
6LSR|1|2|U|4689
6LSR|1|2|B8K|4690
6LSR|1|2|A|4691
6LSR|1|2|A|4692
6LSR|1|2|C|4693
6LSR|1|2|G|4694
6LSR|1|2|C|4695
6LSR|1|2|C|4696
6LSR|1|2|U|4697
6LSR|1|2|C|4698
6LSR|1|2|U|4699
6LSR|1|2|A|4700
6LSR|1|2|A|4701
6LSR|1|2|G|4702

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain V

60S ribosomal protein L13a