HL_6LSR_080
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GGUUCCUCC
- Length
- 9 nucleotides
- Bulged bases
- 6LSR|1|8|U|123, 6LSR|1|8|U|124, 6LSR|1|8|C|125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LSR_080 not in the Motif Atlas
- Geometric match to HL_5ID6_001
- Geometric discrepancy: 0.1246
- The information below is about HL_5ID6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6LSR|1|8|G|121
6LSR|1|8|G|122
6LSR|1|8|U|123
6LSR|1|8|U|124
6LSR|1|8|C|125
6LSR|1|8|C|126
6LSR|1|8|U|127
6LSR|1|8|C|128
6LSR|1|8|C|129
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 60S ribosomal protein L23a
Coloring options: