HL_6LSR_085

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGUUCUCUUUU

Length

11 nucleotides

Bulged bases

6LSR|1|2|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_085 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3685

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6LSR|1|2|A|2623
6LSR|1|2|G|2624
6LSR|1|2|U|2625
6LSR|1|2|U|2626
6LSR|1|2|C|2627
6LSR|1|2|U|2628
6LSR|1|2|C|2629
6LSR|1|2|U|2630
6LSR|1|2|U|2631
6LSR|1|2|U|2632
6LSR|1|2|U|2633

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 0

Zinc finger protein 622

Chain a

60S ribosomal protein L19

Chain d

60S ribosomal protein L22