HL_6LSS_007

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUGUGAG(B9B)C

Length

9 nucleotides

Bulged bases

6LSS|1|2|G|232, 6LSS|1|2|G|236

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_007 not in the Motif Atlas

Homologous match to HL_8P9A_119

Geometric discrepancy: 0.4207

The information below is about HL_8P9A_119

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

6LSS|1|2|G|230
6LSS|1|2|U|231
6LSS|1|2|G|232
6LSS|1|2|U|233
6LSS|1|2|G|234
6LSS|1|2|A|235
6LSS|1|2|G|236
6LSS|1|2|B9B|237
6LSS|1|2|C|238

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain D

60S ribosomal protein L4

Chain h

60S ribosomal protein L26