HL_6LSS_016

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CCCGAAGAGGG

Length

11 nucleotides

Bulged bases

6LSS|1|2|A|1254, 6LSS|1|2|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_016 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1241

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6LSS|1|2|C|1250
6LSS|1|2|C|1251
6LSS|1|2|C|1252
6LSS|1|2|G|1253
6LSS|1|2|A|1254
6LSS|1|2|A|1255
6LSS|1|2|G|1256
6LSS|1|2|A|1257
6LSS|1|2|G|1258
6LSS|1|2|G|1259
6LSS|1|2|G|1260

Current chains

Chain 2

28S rRNA

Nearby chains