HL_6LSS_021
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LSS_021 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.2936
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
6LSS|1|2|C|1436
6LSS|1|2|C|1437
6LSS|1|2|U|1438
6LSS|1|2|C|1439
6LSS|1|2|U|1440
6LSS|1|2|C|1441
6LSS|1|2|C|1442
6LSS|1|2|A|1443
6LSS|1|2|G|1444
6LSS|1|2|U|1445
6LSS|1|2|C|1446
6LSS|1|2|C|1447
6LSS|1|2|G|1448
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L29
- Chain D
- 60S ribosomal protein L4
- Chain Z
- 60S ribosomal protein L18
- Chain p
- 60S ribosomal protein L7
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