HL_6LSS_025

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6LSS|1|2|A|1630, 6LSS|1|2|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_025 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0969

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6LSS|1|2|G|1627
6LSS|1|2|C|1628
6LSS|1|2|G|1629
6LSS|1|2|A|1630
6LSS|1|2|A|1631
6LSS|1|2|A|1632
6LSS|1|2|G|1633
6LSS|1|2|A|1634
6LSS|1|2|C|1635

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain M

60S ribosomal protein L37

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8