HL_6LSS_026

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

6LSS|1|2|C|1676, 6LSS|1|2|C|1678, 6LSS|1|2|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_026 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0986

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6LSS|1|2|C|1675
6LSS|1|2|C|1676
6LSS|1|2|PSU|1677
6LSS|1|2|C|1678
6LSS|1|2|A|1679
6LSS|1|2|G|1680

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain L

60S ribosomal protein L27a

Chain W

60S ribosomal protein L36a