HL_6LSS_048

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUCGCGGCC

Length

9 nucleotides

Bulged bases

6LSS|1|2|G|2910, 6LSS|1|2|G|3586

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_048 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.188

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6LSS|1|2|G|2907
6LSS|1|2|U|2908
6LSS|1|2|C|2909
6LSS|1|2|G|2910
6LSS|1|2|C|3584
6LSS|1|2|G|3585
6LSS|1|2|G|3586
6LSS|1|2|C|3587
6LSS|1|2|C|3588

Current chains

Chain 2

28S rRNA

Nearby chains