HL_6LSS_055

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGCGCGCCG

Length

9 nucleotides

Bulged bases

6LSS|1|2|G|4141, 6LSS|1|2|C|4142

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_055 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3809

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6LSS|1|2|C|4138
6LSS|1|2|G|4139
6LSS|1|2|C|4140
6LSS|1|2|G|4141
6LSS|1|2|C|4142
6LSS|1|2|G|4143
6LSS|1|2|C|4144
6LSS|1|2|C|4145
6LSS|1|2|G|4146

Current chains

Chain 2

28S rRNA

Nearby chains