HL_6LSS_064

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6LSS|1|2|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_064 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.234

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6LSS|1|2|A|4474
6LSS|1|2|G|4475
6LSS|1|2|C|4476
6LSS|1|2|A|4477
6LSS|1|2|G|4478
6LSS|1|2|A|4479
6LSS|1|2|A|4480
6LSS|1|2|U|4481

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain I

60S ribosomal protein L9