HL_6LSS_065

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAUUGUUCACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_065 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3674

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6LSS|1|2|G|4495
6LSS|1|2|A|4496
6LSS|1|2|U|4497
6LSS|1|2|U|4498
6LSS|1|2|G|4499
6LSS|1|2|U|4500
6LSS|1|2|U|4501
6LSS|1|2|C|4502
6LSS|1|2|A|4503
6LSS|1|2|C|4504
6LSS|1|2|C|4505

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L23