HL_6LSS_067

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_067 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.1131

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6LSS|1|2|C|4603
6LSS|1|2|G|4604
6LSS|1|2|A|4605
6LSS|1|2|G|4606
6LSS|1|2|A|4607
6LSS|1|2|G|4608

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain I

60S ribosomal protein L9