HL_6LSS_069

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CU(B8K)AACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6LSS|1|2|G|4694, 6LSS|1|2|C|4698

QA status

Modified nucleotides: B8K

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_069 not in the Motif Atlas

Geometric match to HL_5TBW_067

Geometric discrepancy: 0.0943

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6LSS|1|2|C|4688
6LSS|1|2|U|4689
6LSS|1|2|B8K|4690
6LSS|1|2|A|4691
6LSS|1|2|A|4692
6LSS|1|2|C|4693
6LSS|1|2|G|4694
6LSS|1|2|C|4695
6LSS|1|2|C|4696
6LSS|1|2|U|4697
6LSS|1|2|C|4698
6LSS|1|2|U|4699
6LSS|1|2|A|4700
6LSS|1|2|A|4701
6LSS|1|2|G|4702

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain V

60S ribosomal protein L13a