HL_6LSS_087
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LSS_087 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.167
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6LSS|1|5|A|32
6LSS|1|5|U|33
6LSS|1|5|C|34
6LSS|1|5|U|35
6LSS|1|5|C|36
6LSS|1|5|G|37
6LSS|1|5|U|38
6LSS|1|5|C|39
6LSS|1|5|U|40
6LSS|1|5|G|41
6LSS|1|5|A|42
6LSS|1|5|U|43
6LSS|1|5|C|44
6LSS|1|5|U|45
Current chains
- Chain 5
- 5S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 60S ribosomal protein L11
- Chain r
- 60S ribosomal protein L5
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