HL_6LVR_003
3D structure
- PDB id
- 6LVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- G(5MU)(PSU)CG(1MA)UCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU, 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LVR_003 not in the Motif Atlas
- Homologous match to HL_7VNV_003
- Geometric discrepancy: 0.1329
- The information below is about HL_7VNV_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6LVR|1|B|G|53
6LVR|1|B|5MU|54
6LVR|1|B|PSU|55
6LVR|1|B|C|56
6LVR|1|B|G|57
6LVR|1|B|1MA|58
6LVR|1|B|U|59
6LVR|1|B|C|60
6LVR|1|B|C|61
Current chains
- Chain B
- yeast phenylalanine tRNA
Nearby chains
- Chain A
- Proteinaceous RNase P 1, chloroplastic/mitochondrial
- Chain C
- Proteinaceous RNase P 1, chloroplastic/mitochondrial
Coloring options: