HL_6M62_034

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUUUAUGC

Length

10 nucleotides

Bulged bases

6M62|1|1|U|1572, 6M62|1|1|G|1573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6M62|1|1|G|1565
6M62|1|1|A|1566
6M62|1|1|U|1567
6M62|1|1|U|1568
6M62|1|1|U|1569
6M62|1|1|U|1570
6M62|1|1|A|1571
6M62|1|1|U|1572
6M62|1|1|G|1573
6M62|1|1|C|1574

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain 6

ITS2-1 miscRNA

Chain n

Pescadillo homolog

Chain q

Ribosome biogenesis protein NOP53

Chain t

Ribosome biogenesis protein RLP7