HL_6M62_043

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6M62|1|1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6M62_043 not in the Motif Atlas

Homologous match to HL_5TBW_043

Geometric discrepancy: 0.1328

The information below is about HL_5TBW_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6M62|1|1|C|1923
6M62|1|1|U|1924
6M62|1|1|U|1925
6M62|1|1|C|1926
6M62|1|1|G|1927
6M62|1|1|G|1928

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2

Chain p

60S ribosomal protein L43-A