HL_6M62_045

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6M62_045 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.1614

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6M62|1|1|G|2110
6M62|1|1|G|2111
6M62|1|1|U|2112
6M62|1|1|A|2113
6M62|1|1|C|2114

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain I

Bud site selection protein 20

Chain R

60S ribosomal protein L19-A

Chain u

Ribosome biogenesis protein RLP24