HL_6M62_049

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACAUAGUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6M62_049 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3536

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6M62|1|1|G|2442
6M62|1|1|A|2443
6M62|1|1|C|2444
6M62|1|1|A|2445
6M62|1|1|U|2501
6M62|1|1|A|2502
6M62|1|1|G|2503
6M62|1|1|U|2504
6M62|1|1|U|2505

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain i

60S ribosomal protein L36-A