HL_6M62_053

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAACAGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6M62_053 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3137

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6M62|1|1|G|2672
6M62|1|1|A|2673
6M62|1|1|A|2674
6M62|1|1|C|2675
6M62|1|1|A|2676
6M62|1|1|G|2677
6M62|1|1|A|2678
6M62|1|1|A|2679
6M62|1|1|A|2680
6M62|1|1|U|2681
6M62|1|1|C|2682

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain J

60S ribosomal protein L11-A