HL_6M62_056
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGAAAGU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6M62_056 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.3568
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_04259.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6M62|1|1|A|2743
6M62|1|1|U|2744
6M62|1|1|G|2745
6M62|1|1|A|2746
6M62|1|1|A|2747
6M62|1|1|A|2748
6M62|1|1|G|2749
6M62|1|1|U|2750
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain m
- Nucleolar GTP-binding protein 2
- Chain v
- Ribosome biogenesis protein RPF2
- Chain w
- Regulator of ribosome biosynthesis
Coloring options: