HL_6M62_058
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- 6M62|1|1|U|2842
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6M62_058 not in the Motif Atlas
- Geometric match to HL_1P6V_001
- Geometric discrepancy: 0.2749
- The information below is about HL_1P6V_001
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_53890.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6M62|1|1|C|2840
6M62|1|1|G|2841
6M62|1|1|U|2842
6M62|1|1|U|2843
6M62|1|1|C|2844
6M62|1|1|A|2845
6M62|1|1|U|2846
6M62|1|1|A|2847
6M62|1|1|G|2848
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain 5
- rRNA-processing protein CGR1
- Chain S
- 60S ribosomal protein L20-A
- Chain s
- Nuclear GTP-binding protein NUG1
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