HL_6M62_062
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6M62_062 not in the Motif Atlas
- Geometric match to HL_3OXE_002
- Geometric discrepancy: 0.129
- The information below is about HL_3OXE_002
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_04783.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6M62|1|1|C|3025
6M62|1|1|G|3026
6M62|1|1|A|3027
6M62|1|1|G|3028
6M62|1|1|A|3029
6M62|1|1|G|3030
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain r
- Ribosome biogenesis protein NSA2
- Chain y
- Eukaryotic translation initiation factor 6
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