HL_6M62_078

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6M62_078 not in the Motif Atlas

Homologous match to HL_8P9A_170

Geometric discrepancy: 0.2607

The information below is about HL_8P9A_170

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6M62|1|1|U|2744
6M62|1|1|G|2745
6M62|1|1|A|2746
6M62|1|1|A|2747
6M62|1|1|A|2748
6M62|1|1|G|2749

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain w

Regulator of ribosome biosynthesis