3D structure

PDB id
6MJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the complete turnip yellow mosaic virus 3'UTR
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
GNRA with GA tSW pair
Broad Annotation
GNRA with GA tSW pair
Motif group
HL_85603.1
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
304

Unit IDs

6MJ0|1|B|C|49
6MJ0|1|B|G|50
6MJ0|1|B|A|51
6MJ0|1|B|A|52
6MJ0|1|B|A|53
6MJ0|1|B|G|54

Current chains

Chain B
RNA (101-MER)

Nearby chains

No other chains within 10Å

Coloring options:

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