HL_6MKN_006

3D structure

PDB id

6MKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6MKN|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MKN_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0593

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6MKN|1|A|G|259
6MKN|1|A|G|260
6MKN|1|A|U|261
6MKN|1|A|A|262
6MKN|1|A|A|263
6MKN|1|A|U|264
6MKN|1|A|G|265
6MKN|1|A|G|266
6MKN|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20