HL_6MPF_028

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MPF_028 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1252

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6MPF|1|A|G|1246
6MPF|1|A|G|1247
6MPF|1|A|C|1248
6MPF|1|A|A|1249
6MPF|1|A|A|1250
6MPF|1|A|C|1251

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19

Chain V

30S ribosomal protein Thx