3D structure

PDB id
6MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.33 Å

Loop

Sequence
CAGCCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6MPI_012 not in the Motif Atlas
Geometric match to HL_2Y8W_001
Geometric discrepancy: 0.1807
The information below is about HL_2Y8W_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40612.1
Basepair signature
cWW
Number of instances in this motif group
3

Unit IDs

6MPI|1|A|C|522
6MPI|1|A|A|523
6MPI|1|A|G|524
6MPI|1|A|C|525
6MPI|1|A|C|526
6MPI|1|A|G|527

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12

Coloring options:


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