HL_6MTB_086

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6MTB|1|8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTB_086 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.368

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

6MTB|1|8|G|121
6MTB|1|8|G|122
6MTB|1|8|U|123
6MTB|1|8|U|124
6MTB|1|8|C|125
6MTB|1|8|C|126
6MTB|1|8|U|127
6MTB|1|8|C|128
6MTB|1|8|C|129

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein L23a