HL_6MTB_107

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTB_107 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3936

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6MTB|1|9|U|1114
6MTB|1|9|U|1115
6MTB|1|9|C|1116
6MTB|1|9|C|1117
6MTB|1|9|C|1118
6MTB|1|9|A|1119

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain bb

40S ribosomal protein S27