HL_6MTB_117
3D structure
- PDB id
- 6MTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6MTB|1|9|U|1621, 6MTB|1|9|U|1622, 6MTB|1|9|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MTB_117 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2036
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6MTB|1|9|A|1614
6MTB|1|9|U|1615
6MTB|1|9|U|1616
6MTB|1|9|G|1617
6MTB|1|9|C|1618
6MTB|1|9|A|1619
6MTB|1|9|A|1620
6MTB|1|9|U|1621
6MTB|1|9|U|1622
6MTB|1|9|A|1623
6MTB|1|9|U|1624
6MTB|1|9|U|1625
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain PP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain TT
- 40S ribosomal protein S19
- Chain dd
- 40S ribosomal protein S29
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