HL_6MTC_002

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUUUUAAU

Length

9 nucleotides

Bulged bases

6MTC|1|4|U|36

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_002 not in the Motif Atlas

Homologous match to HL_5UD5_002

Geometric discrepancy: 0.3115

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6MTC|1|4|A|31
6MTC|1|4|C|32
6MTC|1|4|U|33
6MTC|1|4|U|34
6MTC|1|4|U|35
6MTC|1|4|U|36
6MTC|1|4|A|37
6MTC|1|4|A|38
6MTC|1|4|U|39

Current chains

Chain 4

Z-site tRNA

Nearby chains

Chain FF

40S ribosomal protein S5

Chain ZZ

40S ribosomal protein S25