HL_6MTC_038

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

6MTC|1|5|G|2421, 6MTC|1|5|A|2423, 6MTC|1|5|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_038 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.239

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6MTC|1|5|A|2420
6MTC|1|5|G|2421
6MTC|1|5|OMC|2422
6MTC|1|5|A|2423
6MTC|1|5|OMG|2424
6MTC|1|5|U|2425
6MTC|1|5|U|2426

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain l

60S ribosomal protein L39