HL_6MTC_052

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

6MTC|1|5|G|3615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_052 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.1897

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6MTC|1|5|G|3614
6MTC|1|5|G|3615
6MTC|1|5|U|3616
6MTC|1|5|G|3617
6MTC|1|5|C|3618

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain R

60S ribosomal protein L19

Chain W

60S ribosomal protein L24