HL_6MTC_082

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

6MTC|1|8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_082 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.2777

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6MTC|1|8|C|107
6MTC|1|8|A|108
6MTC|1|8|C|109
6MTC|1|8|U|110
6MTC|1|8|U|111
6MTC|1|8|G|112

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein L23a

Chain j

60S ribosomal protein L37

Chain l

60S ribosomal protein L39