HL_6MTC_091

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_091 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1803

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6MTC|1|9|U|416
6MTC|1|9|C|417
6MTC|1|9|A|418
6MTC|1|9|G|419
6MTC|1|9|G|420
6MTC|1|9|G|421

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain JJ

40S ribosomal protein S9

Chain LL

40S ribosomal protein S11

Chain WW

40S ribosomal protein S15a

Chain XX

40S ribosomal protein S23